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Achievement: Pull Sharkx2Achievement: Pair ExtraordinaireAchievement: StarstruckAchievement: YOLO

Achievements

Achievement: Pull Sharkx2Achievement: Pair ExtraordinaireAchievement: StarstruckAchievement: YOLO

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Cobos-Bioinfo/README.md

Alejandro Cobos Filloy

Bioinformatician · Genomics · Reproducible pipelines · Data science

LinkedIn    Email

I'm a bioinformatician with a genetics background. Most of my work sits between genomics and software: building reproducible pipelines, wrangling large omics datasets on HPC, and putting small tools and apps in front of the researchers who use them.

  • 🎓 MSc in Bioinformatics (High-Performance Computing & Big Data) and BSc in Genetics, both at the Universitat Autònoma de Barcelona
  • 🔬 Most recently a Bioinformatics Research Assistant at the CRG (Guigó Lab), where I built Python + Nextflow pipelines, a SQLite analytics layer over millions of records, and a Streamlit app for omics analyses across the Eukaryotic Tree of Life
  • 🧬 Grounded in population & conservation genomics — variant calling, genome-wide selection scans, and diversity statistics from whole-genome sequencing data
  • ⚙️ Care a lot about reproducibility: version-controlled, containerized, documented pipelines that behave the same on a laptop and on an HPC cluster
  • 🌱 Currently going deeper into machine learning on biological data, with some full-stack web dev on the side

Away from the terminal: hiking the FEEC 100 Cims, football, and padel.

Languages & Tools

Languages
Python    R    Bash    SQL / SQLite    TypeScript    JavaScript

Workflows & Infrastructure
Nextflow     Docker    Apptainer / Singularity     Anaconda    Linux

Web & Apps
Streamlit    React    FastAPI

Environment & Tooling
Git    Jupyter    VS Code

Pinned Loading

  1. Euka-Survey Euka-Survey Public

    Fast Streamlit app for exploring genome assemblies, annotations, and RNA-seq resources across the Eukaryotic Tree of Life using a precomputed SQLite database optimized for instant taxonomic queries…

    Python 2 1

  2. 30-Days-Of-Python-Solutions 30-Days-Of-Python-Solutions Public

    In this Repository you will find all solutions to Asabeneh's 30-Days-Of-Python-Challenge

    Python 28 4

  3. classic-msc-thesis classic-msc-thesis Public

    A classic, formal Master's thesis template for Typst. Full front & back matter, rule-framed title page, and APA citations.

    Typst 1

  4. Heart-Disease-Risk-Prediction-Machine-Learning-Analysis Heart-Disease-Risk-Prediction-Machine-Learning-Analysis Public

    Jupyter Notebook